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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3CD26_TETNGUncharacterized protein; Belongs to the DEAD box helicase family. (478 aa)    
Predicted Functional Partners:
H3DF42_TETNG
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
  
 0.974
H3CHY8_TETNG
Uncharacterized protein.
   
 0.973
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.972
H3DDK3_TETNG
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.969
H3CF87_TETNG
Decapping mRNA 2.
   
 0.958
H3CQ57_TETNG
Decapping mRNA 1B.
   
 0.957
H3C7Z3_TETNG
Decapping mRNA 1A.
   
 0.950
H3CQA7_TETNG
CCR4-NOT transcription complex, subunit 8.
   
 0.947
H3DMY7_TETNG
CCR4-NOT transcription complex, subunit 1.
   
 0.946
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
  
 0.943
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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