H3CEF5_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3CEF5_TETNG

Uncharacterized protein. (617 aa)

Predicted Functional Partners:

MC1R

0.696

ST6GALNAC3

0.690

H3CNZ9_TETNG

0.688

DCDC2

0.686

Q4TEF0_TETNG

0.684

H3C3B4_TETNG

0.631

H3C840_TETNG

0.587

H3DN03_TETNG

0.587

Q4RYE6_TETNG

0.582

H3CG61_TETNG

0.573

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DCDC2	H3CEF5_TETNG	ENSTNIP00000010019	ENSTNIP00000006629	Doublecortin domain containing 2.	Uncharacterized protein.	0.686
DCDC2	H3CG61_TETNG	ENSTNIP00000010019	ENSTNIP00000007238	Doublecortin domain containing 2.	Si:ch211-193k19.1.	0.581
H3C3B4_TETNG	H3C840_TETNG	ENSTNIP00000002733	ENSTNIP00000004412	Centromere protein N.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.576
H3C3B4_TETNG	H3CEF5_TETNG	ENSTNIP00000002733	ENSTNIP00000006629	Centromere protein N.	Uncharacterized protein.	0.631
H3C3B4_TETNG	MC1R	ENSTNIP00000002733	ENSTNIP00000012154	Centromere protein N.	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	0.691
H3C3B4_TETNG	Q4TEF0_TETNG	ENSTNIP00000002733	ENSTNIP00000004765	Centromere protein N.	Chromosome undetermined SCAF5459, whole genome shotgun sequence.	0.685
H3C840_TETNG	H3C3B4_TETNG	ENSTNIP00000004412	ENSTNIP00000002733	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	Centromere protein N.	0.576
H3C840_TETNG	H3CEF5_TETNG	ENSTNIP00000004412	ENSTNIP00000006629	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	Uncharacterized protein.	0.587
H3C840_TETNG	H3CNZ9_TETNG	ENSTNIP00000004412	ENSTNIP00000009982	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	Transport and golgi organization 6 homolog (Drosophila).	0.706
H3C840_TETNG	MC1R	ENSTNIP00000004412	ENSTNIP00000012154	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	0.471
H3C840_TETNG	Q4TEF0_TETNG	ENSTNIP00000004412	ENSTNIP00000004765	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	Chromosome undetermined SCAF5459, whole genome shotgun sequence.	0.576
H3CEF5_TETNG	DCDC2	ENSTNIP00000006629	ENSTNIP00000010019	Uncharacterized protein.	Doublecortin domain containing 2.	0.686
H3CEF5_TETNG	H3C3B4_TETNG	ENSTNIP00000006629	ENSTNIP00000002733	Uncharacterized protein.	Centromere protein N.	0.631
H3CEF5_TETNG	H3C840_TETNG	ENSTNIP00000006629	ENSTNIP00000004412	Uncharacterized protein.	Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.	0.587
H3CEF5_TETNG	H3CG61_TETNG	ENSTNIP00000006629	ENSTNIP00000007238	Uncharacterized protein.	Si:ch211-193k19.1.	0.573
H3CEF5_TETNG	H3CNZ9_TETNG	ENSTNIP00000006629	ENSTNIP00000009982	Uncharacterized protein.	Transport and golgi organization 6 homolog (Drosophila).	0.688
H3CEF5_TETNG	H3DN03_TETNG	ENSTNIP00000006629	ENSTNIP00000021901	Uncharacterized protein.	Cyclin D binding myb-like transcription factor 1.	0.587
H3CEF5_TETNG	MC1R	ENSTNIP00000006629	ENSTNIP00000012154	Uncharacterized protein.	Melanocyte-stimulating hormone receptor; Receptor for MSH (alpha, beta and gamma) and ACTH. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family.	0.696
H3CEF5_TETNG	Q4RYE6_TETNG	ENSTNIP00000006629	ENSTNIP00000017469	Uncharacterized protein.	Chromosome 2 SCAF14976, whole genome shotgun sequence.	0.582
H3CEF5_TETNG	Q4TEF0_TETNG	ENSTNIP00000006629	ENSTNIP00000004765	Uncharacterized protein.	Chromosome undetermined SCAF5459, whole genome shotgun sequence.	0.684