STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSTNIP00000007064Antiviral helicase SKI2. (187 aa)    
Predicted Functional Partners:
H3CX06_TETNG
Tetratricopeptide repeat domain 37.
   
 0.980
H3CSQ4_TETNG
WD repeat domain 61.
    
 0.974
H3C385_TETNG
Mtr4 exosome RNA helicase.
 
  
 0.935
H3D996_TETNG
Exosome component 1.
   
 0.912
H3CD88_TETNG
Exosome component 7.
   
 0.910
H3D075_TETNG
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.910
H3CG73_TETNG
Exosome component 9.
   
 0.902
H3CLJ2_TETNG
Exosome component 3.
   
 0.901
H3C3S7_TETNG
Exosome component 10.
   
 0.897
H3CX34_TETNG
Exosome component 8.
   
 0.897
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.