STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1238 aa)    
Predicted Functional Partners:
Q4SSY8_TETNG
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.995
H3DE96_TETNG
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.980
H3DBX9_TETNG
UPF3A regulator of nonsense mediated mRNA decay.
   
 0.975
UPF1
UPF1 RNA helicase and ATPase.
   
 0.972
H3D0H5_TETNG
Uncharacterized protein.
   
 0.972
H3D9K9_TETNG
FATC domain-containing protein.
   
 
 0.971
H3CPN4_TETNG
RRM domain-containing protein.
    
 0.970
H3CWK6_TETNG
RNA binding protein S1, serine-rich domain.
    
 0.970
H3CB69_TETNG
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
    
 0.959
H3DHN3_TETNG
Serine/arginine repetitive matrix 1.
    
 
 0.954
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.