STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3CKU8_TETNGDUF1086 domain-containing protein. (70 aa)    
Predicted Functional Partners:
RBBP7
Chromosome undetermined SCAF7762, whole genome shotgun sequence.
   
 0.728
H3DJC1_TETNG
Retinoblastoma binding protein 4.
   
 0.728
H3CA73_TETNG
AT rich interactive domain 4A (RBP1-like).
    
 0.689
H3DGW8_TETNG
Translocase of outer mitochondrial membrane 20.
    
 0.689
H3CG45_TETNG
Metastasis associated 1 family, member 2.
   
 0.630
H3DIS1_TETNG
Uncharacterized protein.
    
 0.626
H3CID8_TETNG
Metastasis associated 1 family, member 3.
   
 0.601
H3DPM5_TETNG
Metastasis associated 1.
   
 0.601
H3CDI5_TETNG
MBD domain-containing protein.
    
 0.600
H3CZ55_TETNG
Methyl-CpG binding domain protein 3a.
    
 0.600
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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