STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3CL54_TETNGPeroxisome proliferator-activated receptor alpha a. (473 aa)    
Predicted Functional Partners:
PPARA
Peroxisome proliferator-activated receptor alpha b.
  
  
 
0.901
H3CFE0_TETNG
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.832
H3C8P2_TETNG
RRM domain-containing protein.
   
 0.671
H3D182_TETNG
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
   
 0.671
H3C222_TETNG
Fatty acid binding protein 1b, tandem duplicate 1.
    
 0.637
RXRB
Retinoid X receptor beta.
    
0.630
H3CDV5_TETNG
Nuclear receptor domain-containing protein.
    
0.630
H3CLI2_TETNG
Retinoid X receptor, alpha a.
    
0.630
H3DM70_TETNG
Retinoid x receptor, beta b.
    
0.630
H3CNU3_TETNG
Cytochrome P450, family 4, subfamily V, polypeptide 8; Belongs to the cytochrome P450 family.
    
 0.627
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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