STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3CLH9_TETNGSIL1 nucleotide exchange factor. (429 aa)    
Predicted Functional Partners:
H3D075_TETNG
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.991
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
  
 0.987
Q4S563_TETNG
Chromosome 6 SCAF14737, whole genome shotgun sequence.
  
 0.981
Q4TBS0_TETNG
Chromosome 21 SCAF7098, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL5 family.
  
 0.980
H3CBB3_TETNG
Ribosomal protein L35.
  
 0.980
H3D928_TETNG
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.980
H3CRY7_TETNG
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 0.979
H3CBA4_TETNG
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.978
H3CCS7_TETNG
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.978
RPS3
KH type-2 domain-containing protein.
  
 
 0.978
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.