TAT protein (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TAT

Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (465 aa)

Predicted Functional Partners:

H3CT12_TETNG

0.860

H3D669_TETNG

0.749

Q4RE47_TETNG

0.743

H3DQ24_TETNG

0.743

Q4T6G9_TETNG

0.652

H3CV84_TETNG

0.648

THNSL1

0.629

H3CFF8_TETNG

0.604

H3C894_TETNG

0.602

H3CIA9_TETNG

0.602

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3C894_TETNG	H3CIA9_TETNG	ENSTNIP00000004466	ENSTNIP00000007987	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.579
H3C894_TETNG	H3CV84_TETNG	ENSTNIP00000004466	ENSTNIP00000012168	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Aspartate aminotransferase.	0.572
H3C894_TETNG	TAT	ENSTNIP00000004466	ENSTNIP00000011706	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.602
H3C894_TETNG	THNSL1	ENSTNIP00000004466	ENSTNIP00000016641	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Threonine synthase like 1.	0.451
H3CFF8_TETNG	H3CT12_TETNG	ENSTNIP00000006982	ENSTNIP00000011396	Fumarylacetoacetase.	4-hydroxyphenylpyruvate dioxygenase.	0.814
H3CFF8_TETNG	H3CV84_TETNG	ENSTNIP00000006982	ENSTNIP00000012168	Fumarylacetoacetase.	Aspartate aminotransferase.	0.640
H3CFF8_TETNG	H3DQ24_TETNG	ENSTNIP00000006982	ENSTNIP00000022623	Fumarylacetoacetase.	4-hydroxyphenylpyruvate dioxygenase.	0.696
H3CFF8_TETNG	Q4RE47_TETNG	ENSTNIP00000006982	ENSTNIP00000022622	Fumarylacetoacetase.	Chromosome 2 SCAF15135, whole genome shotgun sequence.	0.602
H3CFF8_TETNG	Q4T6G9_TETNG	ENSTNIP00000006982	ENSTNIP00000006516	Fumarylacetoacetase.	Chromosome undetermined SCAF8763, whole genome shotgun sequence.	0.727
H3CFF8_TETNG	TAT	ENSTNIP00000006982	ENSTNIP00000011706	Fumarylacetoacetase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.604
H3CIA9_TETNG	H3C894_TETNG	ENSTNIP00000007987	ENSTNIP00000004466	Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.579
H3CIA9_TETNG	H3CV84_TETNG	ENSTNIP00000007987	ENSTNIP00000012168	Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Aspartate aminotransferase.	0.572
H3CIA9_TETNG	TAT	ENSTNIP00000007987	ENSTNIP00000011706	Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.602
H3CIA9_TETNG	THNSL1	ENSTNIP00000007987	ENSTNIP00000016641	Antizyme inhibitor 1a; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Threonine synthase like 1.	0.451
H3CT12_TETNG	H3CFF8_TETNG	ENSTNIP00000011396	ENSTNIP00000006982	4-hydroxyphenylpyruvate dioxygenase.	Fumarylacetoacetase.	0.814
H3CT12_TETNG	H3CV84_TETNG	ENSTNIP00000011396	ENSTNIP00000012168	4-hydroxyphenylpyruvate dioxygenase.	Aspartate aminotransferase.	0.742
H3CT12_TETNG	H3D669_TETNG	ENSTNIP00000011396	ENSTNIP00000016009	4-hydroxyphenylpyruvate dioxygenase.	Tryptophan 2,3-dioxygenase a.	0.447
H3CT12_TETNG	Q4T6G9_TETNG	ENSTNIP00000011396	ENSTNIP00000006516	4-hydroxyphenylpyruvate dioxygenase.	Chromosome undetermined SCAF8763, whole genome shotgun sequence.	0.405
H3CT12_TETNG	TAT	ENSTNIP00000011396	ENSTNIP00000011706	4-hydroxyphenylpyruvate dioxygenase.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.860
H3CV84_TETNG	H3C894_TETNG	ENSTNIP00000012168	ENSTNIP00000004466	Aspartate aminotransferase.	Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.572