ERMP1 protein (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ERMP1

Endoplasmic reticulum metallopeptidase 1. (839 aa)

Predicted Functional Partners:

RIC1

0.559

H3DGV2_TETNG

0.552

H3C7D4_TETNG

0.551

H3DFK0_TETNG

0.550

H3C656_TETNG

0.535

H3DLD9_TETNG

0.515

H3CGL0_TETNG

0.512

H3CZW2_TETNG

0.505

H3DC10_TETNG

0.500

CPQ

0.493

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPQ	ERMP1	ENSTNIP00000012516	ENSTNIP00000011898	Carboxypeptidase Q.	Endoplasmic reticulum metallopeptidase 1.	0.493
CPQ	H3C7D4_TETNG	ENSTNIP00000012516	ENSTNIP00000004155	Carboxypeptidase Q.	Fibronectin type-III domain-containing protein.	0.560
ERMP1	CPQ	ENSTNIP00000011898	ENSTNIP00000012516	Endoplasmic reticulum metallopeptidase 1.	Carboxypeptidase Q.	0.493
ERMP1	H3C656_TETNG	ENSTNIP00000011898	ENSTNIP00000003726	Endoplasmic reticulum metallopeptidase 1.	Testis derived transcript (3 LIM domains).	0.535
ERMP1	H3C7D4_TETNG	ENSTNIP00000011898	ENSTNIP00000004155	Endoplasmic reticulum metallopeptidase 1.	Fibronectin type-III domain-containing protein.	0.551
ERMP1	H3CGL0_TETNG	ENSTNIP00000011898	ENSTNIP00000007388	Endoplasmic reticulum metallopeptidase 1.	Transmembrane protein 259.	0.512
ERMP1	H3CZW2_TETNG	ENSTNIP00000011898	ENSTNIP00000013798	Endoplasmic reticulum metallopeptidase 1.	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.505
ERMP1	H3DC10_TETNG	ENSTNIP00000011898	ENSTNIP00000018053	Endoplasmic reticulum metallopeptidase 1.	ATPase H+ transporting accessory protein 2.	0.500
ERMP1	H3DFK0_TETNG	ENSTNIP00000011898	ENSTNIP00000019294	Endoplasmic reticulum metallopeptidase 1.	WD repeat domain 81.	0.550
ERMP1	H3DGV2_TETNG	ENSTNIP00000011898	ENSTNIP00000019746	Endoplasmic reticulum metallopeptidase 1.	Taspase, threonine aspartase, 1.	0.552
ERMP1	H3DLD9_TETNG	ENSTNIP00000011898	ENSTNIP00000021337	Endoplasmic reticulum metallopeptidase 1.	N-glycanase 1.	0.515
ERMP1	RIC1	ENSTNIP00000011898	ENSTNIP00000011897	Endoplasmic reticulum metallopeptidase 1.	RIC1 homolog, RAB6A GEF complex partner 1.	0.559
H3C656_TETNG	ERMP1	ENSTNIP00000003726	ENSTNIP00000011898	Testis derived transcript (3 LIM domains).	Endoplasmic reticulum metallopeptidase 1.	0.535
H3C7D4_TETNG	CPQ	ENSTNIP00000004155	ENSTNIP00000012516	Fibronectin type-III domain-containing protein.	Carboxypeptidase Q.	0.560
H3C7D4_TETNG	ERMP1	ENSTNIP00000004155	ENSTNIP00000011898	Fibronectin type-III domain-containing protein.	Endoplasmic reticulum metallopeptidase 1.	0.551
H3CGL0_TETNG	ERMP1	ENSTNIP00000007388	ENSTNIP00000011898	Transmembrane protein 259.	Endoplasmic reticulum metallopeptidase 1.	0.512
H3CGL0_TETNG	H3DLD9_TETNG	ENSTNIP00000007388	ENSTNIP00000021337	Transmembrane protein 259.	N-glycanase 1.	0.553
H3CZW2_TETNG	ERMP1	ENSTNIP00000013798	ENSTNIP00000011898	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Endoplasmic reticulum metallopeptidase 1.	0.505
H3CZW2_TETNG	H3DC10_TETNG	ENSTNIP00000013798	ENSTNIP00000018053	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATPase H+ transporting accessory protein 2.	0.911
H3DC10_TETNG	ERMP1	ENSTNIP00000018053	ENSTNIP00000011898	ATPase H+ transporting accessory protein 2.	Endoplasmic reticulum metallopeptidase 1.	0.500