H3CW31_TETNG protein (Tetraodon nigroviridis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3CW31_TETNG

MAP-kinase activating death domain. (1634 aa)

Predicted Functional Partners:

H3CRH8_TETNG

0.734

H3CEQ5_TETNG

0.652

H3CV99_TETNG

0.652

H3CY98_TETNG

0.652

H3CQ88_TETNG

0.612

H3CI95_TETNG

0.594

H3CJ01_TETNG

0.594

H3CKN9_TETNG

0.594

H3CXV7_TETNG

0.594

RAB3A

0.594

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3CEQ5_TETNG	H3CQ88_TETNG	ENSTNIP00000006729	ENSTNIP00000010422	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.677
H3CEQ5_TETNG	H3CW31_TETNG	ENSTNIP00000006729	ENSTNIP00000012465	Uncharacterized protein.	MAP-kinase activating death domain.	0.652
H3CI95_TETNG	H3CQ88_TETNG	ENSTNIP00000007973	ENSTNIP00000010422	RAB3D, member RAS oncogene family, b.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.591
H3CI95_TETNG	H3CW31_TETNG	ENSTNIP00000007973	ENSTNIP00000012465	RAB3D, member RAS oncogene family, b.	MAP-kinase activating death domain.	0.594
H3CJ01_TETNG	H3CQ88_TETNG	ENSTNIP00000008230	ENSTNIP00000010422	RAB3B, member RAS oncogene family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.591
H3CJ01_TETNG	H3CW31_TETNG	ENSTNIP00000008230	ENSTNIP00000012465	RAB3B, member RAS oncogene family.	MAP-kinase activating death domain.	0.594
H3CKN9_TETNG	H3CQ88_TETNG	ENSTNIP00000008818	ENSTNIP00000010422	Uncharacterized protein.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.591
H3CKN9_TETNG	H3CW31_TETNG	ENSTNIP00000008818	ENSTNIP00000012465	Uncharacterized protein.	MAP-kinase activating death domain.	0.594
H3CQ88_TETNG	H3CEQ5_TETNG	ENSTNIP00000010422	ENSTNIP00000006729	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein.	0.677
H3CQ88_TETNG	H3CI95_TETNG	ENSTNIP00000010422	ENSTNIP00000007973	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB3D, member RAS oncogene family, b.	0.591
H3CQ88_TETNG	H3CJ01_TETNG	ENSTNIP00000010422	ENSTNIP00000008230	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB3B, member RAS oncogene family.	0.591
H3CQ88_TETNG	H3CKN9_TETNG	ENSTNIP00000010422	ENSTNIP00000008818	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Uncharacterized protein.	0.591
H3CQ88_TETNG	H3CV99_TETNG	ENSTNIP00000010422	ENSTNIP00000012183	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB27A, member RAS oncogene family.	0.677
H3CQ88_TETNG	H3CW31_TETNG	ENSTNIP00000010422	ENSTNIP00000012465	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	MAP-kinase activating death domain.	0.612
H3CQ88_TETNG	H3CXV7_TETNG	ENSTNIP00000010422	ENSTNIP00000013092	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB3A, member RAS oncogene family, b.	0.591
H3CQ88_TETNG	H3CY98_TETNG	ENSTNIP00000010422	ENSTNIP00000013233	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	RAB27B, member RAS oncogene family.	0.677
H3CQ88_TETNG	RAB3A	ENSTNIP00000010422	ENSTNIP00000014009	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	Chromosome 15 SCAF14667, whole genome shotgun sequence.	0.591
H3CRH8_TETNG	H3CW31_TETNG	ENSTNIP00000010862	ENSTNIP00000012465	Tumor necrosis factor receptor superfamily, member 1a.	MAP-kinase activating death domain.	0.734
H3CV99_TETNG	H3CQ88_TETNG	ENSTNIP00000012183	ENSTNIP00000010422	RAB27A, member RAS oncogene family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.677
H3CV99_TETNG	H3CW31_TETNG	ENSTNIP00000012183	ENSTNIP00000012465	RAB27A, member RAS oncogene family.	MAP-kinase activating death domain.	0.652