STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3D5C2_TETNGKelch-like family member 40b. (609 aa)    
Predicted Functional Partners:
H3CI58_TETNG
Bardet-Biedl syndrome 9.
   
 0.842
H3CW16_TETNG
Bardet-Biedl syndrome 4.
    
 0.838
H3CYE9_TETNG
Bardet-Biedl syndrome 1.
    
 0.838
H3D688_TETNG
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
   
 0.823
H3DMY8_TETNG
Bardet-Biedl syndrome 2 protein homolog.
    
 0.818
H3D829_TETNG
Leucine zipper transcription factor-like 1.
   
 0.610
H3CBI4_TETNG
Sequestosome 1.
    
 0.520
H3CHN5_TETNG
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.520
H3DCQ5_TETNG
UBX domain-containing protein 7.
    
 0.453
H3CZY9_TETNG
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.434
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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