NRTN protein (Tetraodon nigroviridis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NRTN

Chromosome 15 SCAF14981, whole genome shotgun sequence. (220 aa)

Predicted Functional Partners:

H3D7W7_TETNG

0.974

Q4S3R8_TETNG

0.972

H3C4F3_TETNG

0.786

H3BZW1_TETNG

0.769

H3CEC3_TETNG

0.762

H3CWX4_TETNG

0.762

H3CYY1_TETNG

0.751

H3DE74_TETNG

0.738

PSPN

0.708

H3CUI1_TETNG

0.708

Your Current Organism:

Tetraodon nigroviridis

NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3BZW1_TETNG	H3CUI1_TETNG	ENSTNIP00000001527	ENSTNIP00000011915	Uncharacterized protein.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.800
H3BZW1_TETNG	NRTN	ENSTNIP00000001527	ENSTNIP00000017932	Uncharacterized protein.	Chromosome 15 SCAF14981, whole genome shotgun sequence.	0.769
H3BZW1_TETNG	PSPN	ENSTNIP00000001527	ENSTNIP00000004024	Uncharacterized protein.	Persephin.	0.669
H3BZW1_TETNG	Q4S3R8_TETNG	ENSTNIP00000001527	ENSTNIP00000016066	Uncharacterized protein.	Chromosome 17 SCAF14747, whole genome shotgun sequence.	0.963
H3C4F3_TETNG	H3CUI1_TETNG	ENSTNIP00000003122	ENSTNIP00000011915	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.957
H3C4F3_TETNG	NRTN	ENSTNIP00000003122	ENSTNIP00000017932	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Chromosome 15 SCAF14981, whole genome shotgun sequence.	0.786
H3C4F3_TETNG	PSPN	ENSTNIP00000003122	ENSTNIP00000004024	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Persephin.	0.480
H3C4F3_TETNG	Q4S3R8_TETNG	ENSTNIP00000003122	ENSTNIP00000016066	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	Chromosome 17 SCAF14747, whole genome shotgun sequence.	0.905
H3CEC3_TETNG	H3CUI1_TETNG	ENSTNIP00000006597	ENSTNIP00000011915	Uncharacterized protein.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.939
H3CEC3_TETNG	NRTN	ENSTNIP00000006597	ENSTNIP00000017932	Uncharacterized protein.	Chromosome 15 SCAF14981, whole genome shotgun sequence.	0.762
H3CEC3_TETNG	PSPN	ENSTNIP00000006597	ENSTNIP00000004024	Uncharacterized protein.	Persephin.	0.671
H3CEC3_TETNG	Q4S3R8_TETNG	ENSTNIP00000006597	ENSTNIP00000016066	Uncharacterized protein.	Chromosome 17 SCAF14747, whole genome shotgun sequence.	0.971
H3CUI1_TETNG	H3BZW1_TETNG	ENSTNIP00000011915	ENSTNIP00000001527	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Uncharacterized protein.	0.800
H3CUI1_TETNG	H3C4F3_TETNG	ENSTNIP00000011915	ENSTNIP00000003122	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	0.957
H3CUI1_TETNG	H3CEC3_TETNG	ENSTNIP00000011915	ENSTNIP00000006597	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Uncharacterized protein.	0.939
H3CUI1_TETNG	H3CWX4_TETNG	ENSTNIP00000011915	ENSTNIP00000012759	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Uncharacterized protein.	0.939
H3CUI1_TETNG	H3CYY1_TETNG	ENSTNIP00000011915	ENSTNIP00000013466	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha 4a.	0.888
H3CUI1_TETNG	H3D7W7_TETNG	ENSTNIP00000011915	ENSTNIP00000016608	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha 2b.	0.887
H3CUI1_TETNG	H3DE74_TETNG	ENSTNIP00000011915	ENSTNIP00000018817	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	GDNF family receptor alpha 4b.	0.729
H3CUI1_TETNG	NRTN	ENSTNIP00000011915	ENSTNIP00000017932	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	Chromosome 15 SCAF14981, whole genome shotgun sequence.	0.708