STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3DIJ5_TETNGLisH domain-containing protein. (387 aa)    
Predicted Functional Partners:
H3CED3_TETNG
LIM domain binding 1a.
    
 
 0.557
H3CGZ5_TETNG
LIM-domain binding 1b.
    
 
 0.557
H3D683_TETNG
LIM domain binding 2a.
    
 
 0.557
ENSTNIP00000023027
LIM domain-binding protein 1.
    
 
 0.557
Q4SLL0_TETNG
Chromosome 15 SCAF14556, whole genome shotgun sequence.
   
    0.451
Q4RUE9_TETNG
Chromosome 1 SCAF14995, whole genome shotgun sequence.
   
    0.451
Q4SW74_TETNG
Chromosome 18 SCAF13682, whole genome shotgun sequence.
   
    0.432
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.