STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3DJU0_TETNGRab geranylgeranyltransferase subunit alpha. (569 aa)    
Predicted Functional Partners:
H3CQ88_TETNG
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
   
 0.986
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.984
H3CLM1_TETNG
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.984
H3CQB7_TETNG
RAB24, member RAS oncogene family.
    
 0.778
H3CFY0_TETNG
RAB1B, member RAS oncogene family b.
    
 0.770
H3CBZ9_TETNG
Uncharacterized protein.
    
 0.756
Q4SGG8_TETNG
Chromosome undetermined SCAF14594, whole genome shotgun sequence.
    
 0.739
RAB31
RAB31, member RAS oncogene family.
    
 0.738
Q4RIJ7_TETNG
Chromosome 11 SCAF15043, whole genome shotgun sequence.
    
 0.738
H3CZ23_TETNG
RAB, member RAS oncogene family-like 6b.
    
 0.726
Your Current Organism:
Tetraodon nigroviridis
NCBI taxonomy Id: 99883
Other names: T. nigroviridis, spotted green pufferfish
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