STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_00480Haloacid dehalogenase, type II; COG1011 Predicted hydrolase (HAD superfamily). (225 aa)    
Predicted Functional Partners:
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 0.758
GME_00490
Antibiotic biosynthesis monooxygenase.
 
     0.752
GME_00485
Hypothetical protein.
 
     0.735
GME_00470
Succinate-semialdehyde dehydrogenase (NAD(P)(+)); COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
    
  0.733
GME_00475
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.720
GME_02415
Riboflavin biosynthesis protein RibD; COG0117 Pyrimidine deaminase.
    
 0.720
GME_02420
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
    
 0.720
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.662
GME_05600
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.639
GME_16157
Bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; COG1056 Nicotinamide mononucleotide adenylyltransferase.
    
 0.604
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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