STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_05190COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog. (64 aa)    
Predicted Functional Partners:
GME_14143
4-oxalocrotonate decarboxylase; COG3971 2-keto-4-pentenoate hydratase.
    
 0.673
GME_05185
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.648
GME_02820
Glycosyltransferase.
  
     0.591
GME_05195
COG3038 Cytochrome B561.
       0.582
GME_02870
COG3321 Polyketide synthase modules and related proteins.
  
  
 0.560
GME_14128
COG3971 2-keto-4-pentenoate hydratase.
    
 0.526
GME_05180
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.471
GME_02815
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.408
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.