STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_05705Hypothetical protein. (356 aa)    
Predicted Functional Partners:
GME_05700
Secretion protein HlyD; COG1566 Multidrug resistance efflux pump.
 
     0.965
GME_05695
Hypothetical protein; COG0441 Threonyl-tRNA synthetase.
 
     0.641
GME_18545
Hypothetical protein.
  
     0.609
GME_05710
Hypothetical protein.
       0.600
GME_02224
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.449
GME_14700
Hypothetical protein.
  
    0.439
GME_10791
Hypothetical protein; COG5637 Predicted integral membrane protein.
  
     0.438
GME_18615
COG1846 Transcriptional regulators.
 
     0.431
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.