STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_14068Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (368 aa)    
Predicted Functional Partners:
GME_14058
Rieske (2Fe-2S) domain protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
 0.996
GME_14048
NADH dehydrogenase (quinone); COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
  
 
 0.991
GME_14088
Sarcosine oxidase, subunit alpha; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
 
 0.991
GME_02870
COG3321 Polyketide synthase modules and related proteins.
  
 0.990
GME_14008
NADH:flavin oxidoreductase/NADH oxidase; COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
 
 0.986
GME_14325
COG2124 Cytochrome P450.
  
 0.973
GME_15355
Flavodoxin/nitric oxide synthase; COG0716 Flavodoxins.
   
 0.963
GME_01994
COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 0.953
GME_14023
COG2086 Electron transfer flavoprotein, beta subunit.
 
  
 0.941
GME_09169
Bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; COG1012 NAD-dependent aldehyde dehydrogenases.
  
 
 0.934
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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