STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_15830COG0670 Integral membrane protein, interacts with FtsH; Belongs to the BI1 family. (226 aa)    
Predicted Functional Partners:
GME_15835
Sulfur transfer complex subunit TusD; COG1553 Uncharacterized conserved protein involved in intracellular sulfur reduction.
       0.754
GME_15850
Hypothetical protein; Part of a sulfur-relay system.
     
 0.698
GME_15840
COG2923 Uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.
       0.693
GME_15845
Hypothetical protein; COG2168 Uncharacterized conserved protein involved in oxidation of intracellular sulfur.
       0.682
GME_15825
COG0412 Dienelactone hydrolase and related enzymes.
       0.633
htpX
Heat shock protein HtpX; COG0501 Zn-dependent protease with chaperone function; Belongs to the peptidase M48B family.
  
  
 0.530
GME_16937
COG0501 Zn-dependent protease with chaperone function.
  
  
 0.530
GME_11067
Colicin V production protein; COG1286 Uncharacterized membrane protein, required for colicin V production.
  
    0.495
GME_07414
COG3124 Uncharacterized protein conserved in bacteria.
       0.476
GME_10001
Uroporphyrinogen III C-methyltransferase; COG2959 Uncharacterized enzyme of heme biosynthesis.
  
     0.434
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.