STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_16217Oxidoreductase protein; COG0665 Glycine/D-amino acid oxidases (deaminating). (413 aa)    
Predicted Functional Partners:
GME_14088
Sarcosine oxidase, subunit alpha; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
  
 0.978
gltB
COG0067 Glutamate synthase domain 1.
  
 
 0.861
GME_14083
COG4311 Sarcosine oxidase delta subunit.
  
 0.758
GME_08444
D-amino acid dehydrogenase small subunit; COG0665 Glycine/D-amino acid oxidases (deaminating).
  
  
 
0.753
GME_00700
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.729
GME_03030
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.729
hisC
COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
  0.728
GME_09284
COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins.
   
 
 0.700
GME_01589
COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
 0.688
GME_11026
COG1448 Aspartate/tyrosine/aromatic aminotransferase.
     
 0.687
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.