STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GME_17152Nitrate/nitrite sensor protein NarX; COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific. (632 aa)    
Predicted Functional Partners:
GME_17147
DNA-binding response regulator in two-component regulatory system with NarX (or NarQ); COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 0.998
GME_04127
COG0642 Signal transduction histidine kinase.
  
 
 0.964
GME_01042
PAS sensor protein; COG5002 Signal transduction histidine kinase.
  
 
 0.951
GME_00640
Multi-sensor hybrid histidine kinase; COG2203 FOG: GAF domain.
  
 
 0.938
GME_00315
COG0642 Signal transduction histidine kinase.
  
 
 0.911
GME_02244
LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 0.907
GME_08624
Diguanylate cyclase/phosphodiesterase with GAF sensor; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
  
 
 0.845
GME_01037
Two-component hybrid sensor and regulator; COG2203 FOG: GAF domain.
  
 
 0.840
GME_00045
LuxR family transcriptional regulator; COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
 0.822
GME_17142
COG2223 Nitrate/nitrite transporter.
 
  
 0.805
Your Current Organism:
Halomonas sp. TD01
NCBI taxonomy Id: 999141
Other names: H. sp. TD01
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