STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTRAFRNA transcription, translation and transport factor. (244 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.998
RTCB
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
   
 0.996
FAM98A
Family with sequence similarity 98 member A.
    
 0.996
ENSMMMP00000024448
annotation not available
    
 0.994
C2orf49
Chromosome 2 open reading frame 49.
    
 0.992
SLFNL1
Schlafen like 1.
   
 0.990
ENSMMMP00000003826
annotation not available
    
 0.986
ZBTB8OS
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.937
SLC2A10
Solute carrier family 2 member 10.
    
 0.727
NAAA
N-acylethanolamine acid amidase.
    
 0.727
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.