Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMMP00000001697annotation not available (144 aa)    
Predicted Functional Partners:
PRPF8
pre-mRNA processing factor 8.
   
 0.997
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.994
PRPF6
pre-mRNA processing factor 6.
   
 0.986
DDX23
DEAD-box helicase 23.
   
 0.981
SF3B3
Splicing factor 3b subunit 3.
   
 
 0.977
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.975
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.966
PRPF4
pre-mRNA processing factor 4.
   
 0.962
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.955
PRPF31
pre-mRNA processing factor 31.
    
 0.946
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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