Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (238 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3b subunit 1.
   
 0.989
ENSMMMP00000018589
annotation not available
    
 0.987
U2SURP
U2 snRNP associated SURP domain containing.
    
 0.987
SF3B2
Splicing factor 3b subunit 2.
   
 0.984
PUF60
poly(U) binding splicing factor 60.
   
 0.981
SF3B5
Splicing factor 3b subunit 5.
    
 0.980
SF3A3
Splicing factor 3a subunit 3.
   
 0.977
PHF5A
PHD finger protein 5A.
   
 0.976
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.975
SF3B3
Splicing factor 3b subunit 3.
  
 
 0.971
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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