Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMG20AHigh mobility group 20A. (347 aa)    
Predicted Functional Partners:
KDM1A
Lysine demethylase 1A.
   
 0.990
PHF21A
PHD finger protein 21A.
    
 0.986
RCOR3
REST corepressor 3.
   
 0.982
RCOR1
REST corepressor 1.
   
 0.980
PHF14
PHD finger protein 14.
   
 
 0.980
HMG20B
High mobility group 20B.
    
 
 0.972
HDAC2
Histone deacetylase 2.
   
 0.963
RCOR2
REST corepressor 2.
   
 0.956
SNAI1
Snail family transcriptional repressor 1.
    
   0.949
SFMBT1
Scm like with four mbt domains 1.
    
 
 0.949
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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