Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VXNVexin. (203 aa)    
Predicted Functional Partners:
FAM227B
Family with sequence similarity 227 member B.
      
 0.642
RNF144A
Ring finger protein 144A.
      
 0.642
NOL4L
Nucleolar protein 4 like.
      
 0.573
TMEM126B
Transmembrane protein 126B.
      
 0.570
NRL
Neural retina leucine zipper.
      
 0.566
KIF25
Kinesin family member 25.
      
 0.554
KIFC3
Kinesin family member C3.
      
 0.554
C17orf100
Chromosome 17 open reading frame 100.
   
    0.513
RAPGEF5
Rap guanine nucleotide exchange factor 5.
      
 0.505
SUSD5
Sushi domain containing 5.
      
 0.493
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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