ENSMMMP00000003003 protein (Marmota marmota)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

ENSMMMP00000003003

annotation not available (102 aa)

Predicted Functional Partners:

KDM6A

0.859

KDM6B

0.859

ENSMMMP00000028263

0.859

ARID4A

0.829

ARID4B

0.829

ENSMMMP00000021925

0.811

ENSMMMP00000027064

0.811

GLYR1

0.807

SETD2

0.781

ENSMMMP00000009349

0.781

Your Current Organism:

Marmota marmota

NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSMMMP00000006171	ENSMMMP00000018332	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.819
ARID4A	ENSMMMP00000003003	ENSMMMP00000006171	ENSMMMP00000003003	AT-rich interaction domain 4A.	annotation not available	0.829
ARID4A	ENSMMMP00000009349	ENSMMMP00000006171	ENSMMMP00000009349	AT-rich interaction domain 4A.	annotation not available	0.921
ARID4A	ENSMMMP00000028263	ENSMMMP00000006171	ENSMMMP00000028263	AT-rich interaction domain 4A.	annotation not available	0.744
ARID4A	GLYR1	ENSMMMP00000006171	ENSMMMP00000006769	AT-rich interaction domain 4A.	Glyoxylate reductase 1 homolog.	0.420
ARID4A	KDM6A	ENSMMMP00000006171	ENSMMMP00000013141	AT-rich interaction domain 4A.	Lysine demethylase 6A.	0.744
ARID4A	KDM6B	ENSMMMP00000006171	ENSMMMP00000022685	AT-rich interaction domain 4A.	Lysine demethylase 6B.	0.744
ARID4A	SETD2	ENSMMMP00000006171	ENSMMMP00000007196	AT-rich interaction domain 4A.	SET domain containing 2, histone lysine methyltransferase.	0.577
ARID4B	ARID4A	ENSMMMP00000018332	ENSMMMP00000006171	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.819
ARID4B	ENSMMMP00000003003	ENSMMMP00000018332	ENSMMMP00000003003	AT-rich interaction domain 4B.	annotation not available	0.829
ARID4B	ENSMMMP00000009349	ENSMMMP00000018332	ENSMMMP00000009349	AT-rich interaction domain 4B.	annotation not available	0.921
ARID4B	ENSMMMP00000028263	ENSMMMP00000018332	ENSMMMP00000028263	AT-rich interaction domain 4B.	annotation not available	0.777
ARID4B	GLYR1	ENSMMMP00000018332	ENSMMMP00000006769	AT-rich interaction domain 4B.	Glyoxylate reductase 1 homolog.	0.420
ARID4B	KDM6A	ENSMMMP00000018332	ENSMMMP00000013141	AT-rich interaction domain 4B.	Lysine demethylase 6A.	0.777
ARID4B	KDM6B	ENSMMMP00000018332	ENSMMMP00000022685	AT-rich interaction domain 4B.	Lysine demethylase 6B.	0.762
ARID4B	SETD2	ENSMMMP00000018332	ENSMMMP00000007196	AT-rich interaction domain 4B.	SET domain containing 2, histone lysine methyltransferase.	0.636
ENSMMMP00000003003	ARID4A	ENSMMMP00000003003	ENSMMMP00000006171	annotation not available	AT-rich interaction domain 4A.	0.829
ENSMMMP00000003003	ARID4B	ENSMMMP00000003003	ENSMMMP00000018332	annotation not available	AT-rich interaction domain 4B.	0.829
ENSMMMP00000003003	ENSMMMP00000009349	ENSMMMP00000003003	ENSMMMP00000009349	annotation not available	annotation not available	0.781
ENSMMMP00000003003	ENSMMMP00000021925	ENSMMMP00000003003	ENSMMMP00000021925	annotation not available	annotation not available	0.811