Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB21RAB21, member RAS oncogene family. (214 aa)    
Predicted Functional Partners:
RAB22A
RAB22A, member RAS oncogene family.
   
 0.931
SBF2
SET binding factor 2.
    
 0.926
Rabgef1
annotation not available
    
 0.926
ENSMMMP00000015596
annotation not available
    
 0.926
ENSMMMP00000015627
annotation not available
    
 0.926
ENSMMMP00000015637
annotation not available
    
 0.926
HGS
Hepatocyte growth factor-regulated tyrosine kinase substrate.
    
 
 0.918
STAM
Signal transducing adaptor molecule.
    
   0.916
CHM
CHM Rab escort protein.
     
 0.884
ANKRD27
Ankyrin repeat domain 27.
    
 0.856
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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