STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP40Ubiquitin specific peptidase 40. (1234 aa)    
Predicted Functional Partners:
TP53
Tumor protein p53.
    
 0.982
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.947
ENSMMMP00000018895
annotation not available
    
 0.947
GMPS
Guanine monophosphate synthase.
   
 
 0.945
DAXX
Death domain associated protein.
    
 0.930
DNMT1
DNA methyltransferase 1.
   
 
 0.928
UVSSA
UV stimulated scaffold protein A.
    
 0.923
TRIP12
Thyroid hormone receptor interactor 12.
   
 
 0.912
ENSMMMP00000006533
annotation not available
    
 0.900
RPS27A
Ribosomal protein S27a.
    
 0.900
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.