STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMMP00000003733annotation not available (60 aa)    
Predicted Functional Partners:
LDB2
LIM domain binding 2.
    
 0.644
LDB1
LIM domain binding 1.
    
 0.644
SRF
Serum response factor.
    
 0.602
TCF4
Transcription factor 4.
    
  0.532
TCF12
Transcription factor 12.
    
  0.532
LHX3
LIM homeobox 3.
    
 0.468
LHX4
LIM homeobox 4.
    
 0.468
ENSMMMP00000002485
annotation not available
    
 0.465
GATA5
GATA binding protein 5.
    
 0.465
GATA1
GATA binding protein 1.
    
 0.465
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.