STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFR3AEFR3 homolog A. (848 aa)    
Predicted Functional Partners:
TTC7A
Tetratricopeptide repeat domain 7A.
   
 
 0.851
PI4KA
Phosphatidylinositol 4-kinase alpha.
   
 
 0.837
TTC7B
Tetratricopeptide repeat domain 7B.
   
 
 0.793
SEMA3E
Semaphorin 3E.
      
 0.574
COL5A2
Collagen type V alpha 2 chain.
      
 0.573
DOK4
Docking protein 4.
      
 0.568
FAM126A
Family with sequence similarity 126 member A.
      
 0.467
PPP1R17
Protein phosphatase 1 regulatory subunit 17.
      
 0.447
MCMDC2
Minichromosome maintenance domain containing 2.
   
 
  0.446
PI4KB
Phosphatidylinositol 4-kinase beta.
      
 0.444
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.