RNF152 protein (Marmota marmota) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF152

Ring finger protein 152. (203 aa)

Predicted Functional Partners:

RRAGA

0.954

RRAGB

0.953

ZNF507

0.824

INTS5

0.803

IRAK1

0.796

DNAJC11

0.785

BNIP1

0.739

TSPAN12

0.671

ENSMMMP00000006790

0.665

ENSMMMP00000023413

0.665

Your Current Organism:

Marmota marmota

NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNIP1	RNF152	ENSMMMP00000011358	ENSMMMP00000004080	BCL2 interacting protein 1.	Ring finger protein 152.	0.739
DNAJC11	INTS5	ENSMMMP00000020157	ENSMMMP00000002865	DnaJ heat shock protein family (Hsp40) member C11.	Integrator complex subunit 5.	0.822
DNAJC11	RNF152	ENSMMMP00000020157	ENSMMMP00000004080	DnaJ heat shock protein family (Hsp40) member C11.	Ring finger protein 152.	0.785
DNAJC11	ZNF507	ENSMMMP00000020157	ENSMMMP00000008163	DnaJ heat shock protein family (Hsp40) member C11.	Zinc finger protein 507.	0.816
ENSMMMP00000006790	IRAK1	ENSMMMP00000006790	ENSMMMP00000011133	annotation not available	Interleukin 1 receptor associated kinase 1.	0.657
ENSMMMP00000006790	RNF152	ENSMMMP00000006790	ENSMMMP00000004080	annotation not available	Ring finger protein 152.	0.665
ENSMMMP00000006790	RRAGA	ENSMMMP00000006790	ENSMMMP00000007437	annotation not available	Ras related GTP binding A.	0.439
ENSMMMP00000006790	RRAGB	ENSMMMP00000006790	ENSMMMP00000022057	annotation not available	Ras related GTP binding B.	0.437
ENSMMMP00000023413	IRAK1	ENSMMMP00000023413	ENSMMMP00000011133	annotation not available	Interleukin 1 receptor associated kinase 1.	0.657
ENSMMMP00000023413	RNF152	ENSMMMP00000023413	ENSMMMP00000004080	annotation not available	Ring finger protein 152.	0.665
ENSMMMP00000023413	RRAGA	ENSMMMP00000023413	ENSMMMP00000007437	annotation not available	Ras related GTP binding A.	0.439
ENSMMMP00000023413	RRAGB	ENSMMMP00000023413	ENSMMMP00000022057	annotation not available	Ras related GTP binding B.	0.437
INTS5	DNAJC11	ENSMMMP00000002865	ENSMMMP00000020157	Integrator complex subunit 5.	DnaJ heat shock protein family (Hsp40) member C11.	0.822
INTS5	RNF152	ENSMMMP00000002865	ENSMMMP00000004080	Integrator complex subunit 5.	Ring finger protein 152.	0.803
INTS5	ZNF507	ENSMMMP00000002865	ENSMMMP00000008163	Integrator complex subunit 5.	Zinc finger protein 507.	0.836
IRAK1	ENSMMMP00000006790	ENSMMMP00000011133	ENSMMMP00000006790	Interleukin 1 receptor associated kinase 1.	annotation not available	0.657
IRAK1	ENSMMMP00000023413	ENSMMMP00000011133	ENSMMMP00000023413	Interleukin 1 receptor associated kinase 1.	annotation not available	0.657
IRAK1	RNF152	ENSMMMP00000011133	ENSMMMP00000004080	Interleukin 1 receptor associated kinase 1.	Ring finger protein 152.	0.796
IRAK1	TSPAN12	ENSMMMP00000011133	ENSMMMP00000016605	Interleukin 1 receptor associated kinase 1.	Tetraspanin 12.	0.611
RNF152	BNIP1	ENSMMMP00000004080	ENSMMMP00000011358	Ring finger protein 152.	BCL2 interacting protein 1.	0.739