Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH6Cadherin 6. (790 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
    
 0.884
CTNNA2
Catenin alpha 2.
    
 0.827
CTNNA1
Catenin alpha 1.
    
 0.827
CDH18
Cadherin 18.
   
0.818
JUP
Junction plakoglobin.
    
 0.809
CDH9
Cadherin 9.
  
 
 
0.793
CDH8
Cadherin 8.
  
  
 
0.784
CDH7
Cadherin 7.
  
  
0.784
CDH13
Cadherin 13.
     
0.783
CDH17
Cadherin 17.
     
0.782
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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