Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF31pre-mRNA processing factor 31. (499 aa)    
Predicted Functional Partners:
PRPF6
pre-mRNA processing factor 6.
   
 0.998
PRPF4
pre-mRNA processing factor 4.
   
 0.998
PRPF3
pre-mRNA processing factor 3.
   
 0.998
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.997
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.993
PRPF8
pre-mRNA processing factor 8.
    
 0.992
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.987
SF3A3
Splicing factor 3a subunit 3.
   
 0.987
ENSMMMP00000002020
annotation not available
    
 0.986
PPIH
Peptidylprolyl isomerase H.
    
 0.986
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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