Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB29RAB29, member RAS oncogene family. (204 aa)    
Predicted Functional Partners:
ENSMMMP00000011110
annotation not available
    
 
 0.884
C11orf49
Chromosome 11 open reading frame 49.
    
   0.865
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.853
RILPL2
Rab interacting lysosomal protein like 2.
      
 0.853
ENSMMMP00000000446
annotation not available
    
 0.821
ENSMMMP00000013328
annotation not available
    
 0.821
GAK
Cyclin G associated kinase.
    
 
 0.799
ENSMMMP00000009749
annotation not available
    
 
 0.799
NUCKS1
Nuclear casein kinase and cyclin dependent kinase substrate 1.
 
    
 0.786
CHM
CHM Rab escort protein.
    
 0.786
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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