Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VSTM5V-set and transmembrane domain containing 5. (193 aa)    
Predicted Functional Partners:
GPR176
G protein-coupled receptor 176.
      
 0.774
ANKRD55
Ankyrin repeat domain 55.
      
 0.743
SMCO4
Single-pass membrane protein with coiled-coil domains 4.
      
 0.675
Med17
annotation not available
      
 0.659
GALR1
Galanin receptor 1.
   
  
 0.659
C11orf54
Chromosome 11 open reading frame 54.
      
 0.638
DHRS7C
Dehydrogenase/reductase 7C.
      
 0.575
WDR27
WD repeat domain 27.
      
 0.493
KCNIP4
Potassium voltage-gated channel interacting protein 4.
      
 0.492
KCNIP2
Potassium voltage-gated channel interacting protein 2.
      
 0.492
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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