STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP54Ubiquitin specific peptidase 54. (1584 aa)    
Predicted Functional Partners:
USP50
Ubiquitin specific peptidase 50.
      
 0.565
TCAP
Titin-cap.
   
 
 0.548
PAN2
poly(A) specific ribonuclease subunit PAN2.
      
 0.515
C1orf74
Chromosome 1 open reading frame 74.
      
 0.461
USP13
Ubiquitin specific peptidase 13.
   
  
 0.445
RNF150
Ring finger protein 150.
      
 0.434
SMPX
Small muscle protein X-linked.
   
  
 0.414
ACTN1
Actinin alpha 1.
   
 
 0.408
ACTN4
Actinin alpha 4.
   
 
 0.408
EHBP1
EH domain binding protein 1.
   
 
 0.408
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.