Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB38RAB38, member RAS oncogene family. (211 aa)    
Predicted Functional Partners:
RAB32
RAB32, member RAS oncogene family.
   
  0.963
CHM
CHM Rab escort protein.
    
 0.914
ANKRD27
Ankyrin repeat domain 27.
    
 
 0.893
TYRP1
Tyrosinase related protein 1.
      
 0.850
HPS1
HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.
    
 0.850
GAK
Cyclin G associated kinase.
    
 
 0.799
ENSMMMP00000009749
annotation not available
    
 
 0.799
ENSMMMP00000000446
annotation not available
    
 0.764
ENSMMMP00000013328
annotation not available
    
 0.764
GFPT2
Glutamine-fructose-6-phosphate transaminase 2.
      
 0.704
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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