Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SDC4Syndecan 4. (199 aa)    
Predicted Functional Partners:
SDC1
Syndecan 1.
   
 0.998
FN1
Fibronectin 1.
    
 0.993
GPC1
Glypican 1.
   
 
 0.988
SDC3
Syndecan 3.
    
 0.987
THBS1
Thrombospondin 1.
    
 0.980
THBS2
Thrombospondin 2.
    
 0.978
THBS4
Thrombospondin 4.
    
 0.977
THBS3
Thrombospondin 3.
    
 0.977
TNC
Tenascin C.
     
 0.976
TNR
Tenascin R.
     
 0.976
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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