ENSMMMP00000006325 protein (Marmota marmota)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSMMMP00000006325

annotation not available (627 aa)

Predicted Functional Partners:

UBXN7

0.980

CUL2

0.930

RBX1

0.919

APPBP2

0.900

FNIP1

0.895

ASB4

0.886

KLHDC10

0.876

KLHDC2

0.871

ARIH1

0.871

KLHDC3

0.863

Your Current Organism:

Marmota marmota

NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APPBP2	ARIH1	ENSMMMP00000022476	ENSMMMP00000004428	Amyloid beta precursor protein binding protein 2.	Ariadne RBR E3 ubiquitin protein ligase 1.	0.936
APPBP2	ASB4	ENSMMMP00000022476	ENSMMMP00000014863	Amyloid beta precursor protein binding protein 2.	Ankyrin repeat and SOCS box containing 4.	0.938
APPBP2	CUL2	ENSMMMP00000022476	ENSMMMP00000018679	Amyloid beta precursor protein binding protein 2.	Cullin 2.	0.850
APPBP2	ENSMMMP00000006325	ENSMMMP00000022476	ENSMMMP00000006325	Amyloid beta precursor protein binding protein 2.	annotation not available	0.900
APPBP2	KLHDC10	ENSMMMP00000022476	ENSMMMP00000015234	Amyloid beta precursor protein binding protein 2.	Kelch domain containing 10.	0.935
APPBP2	KLHDC2	ENSMMMP00000022476	ENSMMMP00000003209	Amyloid beta precursor protein binding protein 2.	Kelch domain containing 2.	0.942
APPBP2	KLHDC3	ENSMMMP00000022476	ENSMMMP00000028136	Amyloid beta precursor protein binding protein 2.	Kelch domain containing 3.	0.945
APPBP2	RBX1	ENSMMMP00000022476	ENSMMMP00000004525	Amyloid beta precursor protein binding protein 2.	Ring-box 1.	0.938
APPBP2	UBXN7	ENSMMMP00000022476	ENSMMMP00000011282	Amyloid beta precursor protein binding protein 2.	UBX domain protein 7.	0.486
ARIH1	APPBP2	ENSMMMP00000004428	ENSMMMP00000022476	Ariadne RBR E3 ubiquitin protein ligase 1.	Amyloid beta precursor protein binding protein 2.	0.936
ARIH1	ASB4	ENSMMMP00000004428	ENSMMMP00000014863	Ariadne RBR E3 ubiquitin protein ligase 1.	Ankyrin repeat and SOCS box containing 4.	0.930
ARIH1	CUL2	ENSMMMP00000004428	ENSMMMP00000018679	Ariadne RBR E3 ubiquitin protein ligase 1.	Cullin 2.	0.851
ARIH1	ENSMMMP00000006325	ENSMMMP00000004428	ENSMMMP00000006325	Ariadne RBR E3 ubiquitin protein ligase 1.	annotation not available	0.871
ARIH1	KLHDC10	ENSMMMP00000004428	ENSMMMP00000015234	Ariadne RBR E3 ubiquitin protein ligase 1.	Kelch domain containing 10.	0.936
ARIH1	KLHDC2	ENSMMMP00000004428	ENSMMMP00000003209	Ariadne RBR E3 ubiquitin protein ligase 1.	Kelch domain containing 2.	0.942
ARIH1	KLHDC3	ENSMMMP00000004428	ENSMMMP00000028136	Ariadne RBR E3 ubiquitin protein ligase 1.	Kelch domain containing 3.	0.939
ARIH1	RBX1	ENSMMMP00000004428	ENSMMMP00000004525	Ariadne RBR E3 ubiquitin protein ligase 1.	Ring-box 1.	0.997
ASB4	APPBP2	ENSMMMP00000014863	ENSMMMP00000022476	Ankyrin repeat and SOCS box containing 4.	Amyloid beta precursor protein binding protein 2.	0.938
ASB4	ARIH1	ENSMMMP00000014863	ENSMMMP00000004428	Ankyrin repeat and SOCS box containing 4.	Ariadne RBR E3 ubiquitin protein ligase 1.	0.930
ASB4	CUL2	ENSMMMP00000014863	ENSMMMP00000018679	Ankyrin repeat and SOCS box containing 4.	Cullin 2.	0.870