STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC28BCoiled-coil domain containing 28B. (200 aa)    
Predicted Functional Partners:
ENSMMMP00000024819
annotation not available
    
 
 0.651
BBS4
Bardet-Biedl syndrome 4.
    
 
 0.647
BBS7
Bardet-Biedl syndrome 7.
    
 
 0.616
TTC8
Tetratricopeptide repeat domain 8.
    
 
 0.586
ENSMMMP00000026859
annotation not available
    
 
 0.563
BBS2
Bardet-Biedl syndrome 2.
    
 
 0.533
BBS10
Bardet-Biedl syndrome 10.
    
 
 0.501
BBS12
Bardet-Biedl syndrome 12.
      
 0.459
MKS1
MKS transition zone complex subunit 1.
      
 0.450
WDPCP
WD repeat containing planar cell polarity effector.
      
 0.449
Your Current Organism:
Marmota marmota
NCBI taxonomy Id: 9994
Other names: Alpine marmot, M. marmota marmota, Marmota marmota marmota
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.