STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMD16131.1Hypothetical protein. (591 aa)    
Predicted Functional Partners:
EMD16132.1
Competence protein ComEA helix-hairpin-helix repeat region.
 
  
 0.875
EMD16085.1
Hypothetical protein.
 
  
 0.866
EMD16986.1
Hypothetical protein.
 
  
 0.820
EMD16128.1
DNA polymerase III, delta subunit.
 
   
 0.801
EMD16142.1
DNA protecting protein DprA.
 
  
 0.781
EMD16357.1
Hypothetical protein.
  
  
 0.776
EMD16987.1
Hypothetical protein.
  
  
 0.771
EMD16989.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Overlaps another CDS with the same product name.
   
  
 0.751
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
     
 0.736
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
     
 0.731
Your Current Organism:
Eggerthia catenaformis
NCBI taxonomy Id: 999415
Other names: E. catenaformis OT 569 = DSM 20559, Eggerthia catenaformis DSM 20559, Eggerthia catenaformis OT 569, Eggerthia catenaformis OT 569 = DSM 20559, Lactobacillus catenaformis DSM 20559 = OT 569, Lactobacillus catenaformis OT 569
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.