STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000383995_02263Unannotated protein. (218 aa)    
Predicted Functional Partners:
GCA_000383995_02268
Unannotated protein.
      0.850
GCA_000383995_00644
Unannotated protein.
  
     0.766
GCA_000383995_04142
Unannotated protein.
 
 
  0.700
GCA_000383995_00620
Unannotated protein.
  
 
  0.680
GCA_000383995_00509
Unannotated protein.
 
 
 0.673
GCA_000383995_04749
Unannotated protein.
  
  
 
0.601
GCA_000383995_03840
Unannotated protein.
    
 0.595
GCA_000383995_01895
Unannotated protein.
    
  0.590
GCA_000383995_03122
Unannotated protein.
     
 0.550
GCA_000383995_01896
Unannotated protein.
   
 
  0.549
Your Current Organism:
Salinispora pacifica DSM 45543
NCBI taxonomy Id: 999542
Other names: S. pacifica DSM 45543 = CNS-863, Salinispora pacifica CNS-863, Salinispora pacifica CNS-863 = DSM 45543, Salinispora pacifica DSM 45543 = CNS-863
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.