STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000383995_03964Unannotated protein. (735 aa)    
Predicted Functional Partners:
GCA_000383995_03963
Unannotated protein.
 
     0.720
GCA_000383995_02218
Unannotated protein.
   
 
 0.426
GCA_000383995_02365
Unannotated protein.
   
 
 0.426
GCA_000383995_00039
Unannotated protein.
   
 
 0.420
GCA_000383995_00055
Unannotated protein.
   
 
 0.420
GCA_000383995_03507
Unannotated protein.
   
 
 0.420
GCA_000383995_03962
Unannotated protein.
       0.414
GCA_000383995_03462
Unannotated protein.
    
 
 0.402
Your Current Organism:
Salinispora pacifica DSM 45543
NCBI taxonomy Id: 999542
Other names: S. pacifica DSM 45543 = CNS-863, Salinispora pacifica CNS-863, Salinispora pacifica CNS-863 = DSM 45543, Salinispora pacifica DSM 45543 = CNS-863
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.