STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000378845_02741Unannotated protein. (89 aa)    
Predicted Functional Partners:
GCA_000378845_04252
Unannotated protein.
  
     0.570
GCA_000378845_04181
Unannotated protein.
  
     0.539
GCA_000378845_02719
Unannotated protein.
  
     0.531
GCA_000378845_02419
Unannotated protein.
  
     0.504
GCA_000378845_01826
Unannotated protein.
  
     0.502
GCA_000378845_04492
Unannotated protein.
  
     0.486
GCA_000378845_01953
Unannotated protein.
  
     0.482
GCA_000378845_03899
Unannotated protein.
  
     0.470
GCA_000378845_03426
Unannotated protein.
  
     0.468
GCA_000378845_04482
Unannotated protein.
  
     0.465
Your Current Organism:
Salinispora pacifica DSM 45544
NCBI taxonomy Id: 999543
Other names: S. pacifica DSM 45544, Salinispora pacifica CNS-960, Salinispora pacifica str. DSM 45544, Salinispora pacifica strain DSM 45544
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.