AHD02431.1 protein (Leisingera methylohalidivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AHD02431.1

Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (535 aa)

Predicted Functional Partners:

AHD02430.1

0.993

AHD01353.1

0.952

AHC99966.1

0.950

AHD02429.1

0.950

AHD01892.1

0.945

AHD00307.1

0.944

AHC99656.1

0.903

AHC99760.1

0.807

AHD02432.1

0.800

AHC99759.1

0.795

Your Current Organism:

Leisingera methylohalidivorans

NCBI taxonomy Id: 999552
Other names: L. methylohalidivorans DSM 14336, Leisingera methylohalidivorans DSM 14336, Leisingera methylohalidivorans MB2, Leisingera methylohalidivorans str. DSM 14336, Leisingera methylohalidivorans strain DSM 14336

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHC99656.1	AHD02429.1	METH_02050	METH_18995	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
AHC99656.1	AHD02431.1	METH_02050	METH_19005	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.903
AHC99759.1	AHC99760.1	METH_02635	METH_02640	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AHC99759.1	AHC99966.1	METH_02635	METH_03845	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AHC99759.1	AHD01353.1	METH_02635	METH_12305	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AHC99759.1	AHD01892.1	METH_02635	METH_15440	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
AHC99759.1	AHD02431.1	METH_02635	METH_19005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.795
AHC99760.1	AHC99759.1	METH_02640	METH_02635	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AHC99760.1	AHD02429.1	METH_02640	METH_18995	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
AHC99760.1	AHD02431.1	METH_02640	METH_19005	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.807
AHC99966.1	AHC99759.1	METH_03845	METH_02635	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
AHC99966.1	AHD02429.1	METH_03845	METH_18995	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AHC99966.1	AHD02431.1	METH_03845	METH_19005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.950
AHD00307.1	AHD02429.1	METH_05815	METH_18995	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AHD00307.1	AHD02431.1	METH_05815	METH_19005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.944
AHD01353.1	AHC99759.1	METH_12305	METH_02635	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
AHD01353.1	AHD02429.1	METH_12305	METH_18995	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
AHD01353.1	AHD02431.1	METH_12305	METH_19005	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Microcin C ABC transporter ATP-binding protein YejF; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.952
AHD01892.1	AHC99759.1	METH_15440	METH_02635	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
AHD01892.1	AHD02429.1	METH_15440	METH_18995	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About