STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT37366.1Rhomboid family protein. (228 aa)    
Predicted Functional Partners:
tatA
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.873
SFU06313.1
N-acetylmuramoyl-L-alanine amidase.
  
   0.764
SFT81066.1
Hypothetical protein.
  
     0.761
SFU20741.1
Hypothetical protein.
  
     0.753
SFU03537.1
Hypothetical protein.
  
     0.741
SFU06260.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.724
SFU03873.1
Hypothetical protein.
  
     0.706
SFT92754.1
Beta-barrel assembly machine subunit BamF.
  
     0.691
SFU07377.1
Hypothetical protein.
 
     0.691
SFT50970.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
   
 0.674
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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