STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT54245.1Tripartite ATP-independent transporter solute receptor, DctP family. (327 aa)    
Predicted Functional Partners:
SFT54213.1
C4-dicarboxylate transporter, DctM subunit.
  
 0.960
SFT54228.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.922
SFT87177.1
TRAP transporter, DctM subunit.
 
    0.835
SFU19445.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.824
SFU18308.1
TRAP transporter, DctM subunit.
 
    0.820
SFU10397.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.816
SFT99868.1
TRAP transporter, DctM subunit.
 
    0.815
SFT64510.1
TRAP transporter, DctM subunit.
 
    0.810
SFU20724.1
TRAP transporter, DctM subunit.
 
    0.805
SFT94551.1
TRAP transporter, DctM subunit.
 
    0.801
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.