STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT66681.1TRAP transporter, DctM subunit. (467 aa)    
Predicted Functional Partners:
SFT66663.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
  0.994
SFT66643.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.990
SFT54213.1
C4-dicarboxylate transporter, DctM subunit.
  
 
0.574
SFT72318.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.566
SFT72302.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.557
SFT72548.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.531
SFU19363.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.507
SFT71766.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.497
SFU10409.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 0.470
SFU13253.1
C4-dicarboxylate transporter, DctQ subunit.
  
 0.470
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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