STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFT73732.1Type IV secretion system protein VirD4. (674 aa)    
Predicted Functional Partners:
SFT73748.1
Type IV secretion system T-DNA border endonuclease VirD2.
 
   
 0.957
SFT73621.1
Type IV secretion system protein VirB10.
 
 
 0.889
SFT73607.1
Type IV secretion system protein VirB9.
   
 0.834
SFT73536.1
Type IV secretion system protein VirB4.
  
 0.831
SFU15576.1
Type IV secretion system T-DNA border endonuclease VirD2.
 
   
 0.814
SFT73522.1
Type IV secretion system protein VirB3.
 
   
 0.811
SFT73592.1
Type IV secretion system protein VirB8.
 
   
 0.811
SFT73510.1
Type IV secretion system protein VirB2.
 
   
 0.805
SFT73685.1
Type IV secretion system protein VirB6.
 
   
 0.799
SFT73638.1
Type IV secretion system protein VirB11.
   
 0.798
Your Current Organism:
Sedimentitalea nanhaiensis
NCBI taxonomy Id: 999627
Other names: CCTCC AB 208316, DSM 24252, LMG 24841, LMG:24841, Leisingera nanhaiensis, Leisingera nanhaiensis Sun et al. 2010, MCCC 1A04178, S. nanhaiensis, Sedimentitalea nanhaiensis (Sun et al. 2010) Breider et al. 2014, strain NH52F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.